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  • Publications
    • Cross-species comparison of amniote single-cell transcriptomes reveals evolutionary conservation and divergence in the chicken immune system
    • Comprehensive multi-omics reveals dynamic chromatin changes and gene regulatory networks during duck folliculogenesis
    • Single-cell transcriptomics reveal mechanisms of skeletal muscle differentiation across duck embryonic development
    • Genetic Basis of Egg Production in Baicheng-You Chickens: A Genome-Wide Association Study
    • Comprehensive duck DNA fingerprinting based on machine learning for breed identification
    • Reply to: The genomic structure of complex chromosomal rearrangement at the Fm locus in black-bone Silkie chicken
    • The Farm Animal Genotype-Tissue Expression (FarmGTEx) Project
    • Near telomere-to-telomere genome assemblies of Silkie Gallus gallus and Mallard Anas platyrhynchos restored the structure of chromosomes and missing genes in birds
    • Hyperthermia suppresses the biological characteristics and migration of chicken primordial germ cells
    • Pan-genome analyses add ∼1000 genes to the complete genome assembly of chicken
    • Research note: Whole-genome sequencing revealed genomic diversity dynamics in duck conserved populations
    • Comparative Analysis of Myofiber Characteristics, Shear Force, and Amino Acid Contents in Slow- and Fast-Growing Broilers
    • Genome-wide association analysis identifies candidate genes for carcass yields in Peking ducks
    • Transcriptional activity and variation analysis of genes critical for long-chain fatty acid (C≥16) elongation and desaturation in Pekin ducks
    • The Application of Duck Embryonic Fibroblasts CCL-141 as a Cell Model for Adipogenesis
    • The impact of NUMB on chicken abdominal adipogenesis: A comprehensive analysis
    • Genome-Wide Association Analysis Identifies Important Haplotypes and Candidate Gene XKR4 for Body Size Traits in Pekin Ducks
    • Genome-Wide Association Analysis and Genetic Parameters for Egg Production Traits in Peking Ducks
    • Green Light Mitigates Cyclic Chronic Heat-Stress-Induced Liver Oxidative Stress and Inflammation via NF-κB Pathway Inhibition in Geese
    • Transcriptional regulatory mechanism of NR2F2 and ZNF423 in avian preadipocyte differentiation
    • NOTCH1 as a Negative Regulator of Avian Adipocyte Differentiation: Implications for Fat Deposition
    • Correction to: mechanisms of hepatic steatosis in chickens: integrated analysis of the host genome, molecular phenomics and gut microbiome
    • Mechanisms of hepatic steatosis in chickens: integrated analysis of the host genome, molecular phenomics and gut microbiome
    • Selection on the promoter regions plays an important role in complex traits during duck domestication
    • A chromosome-level genome assembly for the Silkie chicken resolves complete sequences for key chicken metabolic, reproductive, and immunity genes
    • Research Note: Identification of core promoter region of the polyunsaturated fatty acid synthesis-related gene family in chicken
    • A novel candidate gene CLN8 regulates fat deposition in avian
    • Genome-wide association study identified the candidate genes associated with angel wing trait in Pekin duck
    • Exploring the effect of the microbiota on the production of duck striped eggs
    • Chromosome-level genome assembly of the Muscovy duck provides insight into fatty liver susceptibility
    • Dynamic transcriptome changes during osteogenic differentiation of bone marrow-derived mesenchymal stem cells isolated from chicken
    • Mitochondrial genome undergoes de novo DNA methylation that protects mtDNA against oxidative damage during the peri-implantation window
    • Fourth Report on Chicken Genes and Chromosomes 2022
    • The Full-Length Transcriptome Provides New Insights Into the Transcript Complexity of Abdominal Adipose and Subcutaneous Adipose in Pekin Ducks
    • Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication
    • Mining Unknown Porcine Protein Isoforms by Tissue-based Map of Proteome Enhances Pig Genome Annotation
    • Prediction of Peking duck intramuscle fat content by near-infrared spectroscopy
    • Microbial Composition in the Duodenum and Ileum of Yellow Broilers With High and Low Feed Efficiency
    • Comparison of carcass and meat quality traits between lean and fat Pekin ducks
    • Genome-wide association study reveals novel loci associated with feeding behavior in Pekin ducks
    • MYOD1 inhibits avian adipocyte differentiation via miRNA-206/KLF4 axis
    • Genome-wide association study of bone quality and feed efficiency-related traits in Pekin ducks
    • Integrating transcriptome, proteome and QTL data to discover functionally important genes for duck eggshell and albumen formation
    • Selection response and genetic parameter estimation of feeding behavior traits in Pekin ducks
    • Genome-wide association study of the level of blood components in Pekin ducks
    • The transcriptome landscapes of ovary and three oviduct segments during chicken (Gallus gallus) egg formation
    • Full-length transcriptome sequencing from multiple tissues of duck, Anas platyrhynchos
    • Transcriptome analysis of miRNA and mRNA in the livers of pigs with highly diverged backfat thickness
    • Efficacy of Fecal Sampling as a Gut Proxy in the Study of Chicken Gut Microbiota
    • Dynamics of transcriptome changes during subcutaneous preadipocyte differentiation in ducks
    • Genome-Wide Association Study of Growth and Feeding Traits in Pekin Ducks
    • Comparative study of eggshell antibacterial effectivity in precocial and altricial birds using Escherichia coli
    • iTRAQ-Based Quantitative Proteomic Analysis of Duck Eggshell During Biomineralization
    • Revisiting avian 'missing' genes from de novo assembled transcripts
    • Genome-wide association study reveals novel loci associated with body size and carcass yields in Pekin ducks
    • Revolutionize livestock breeding in the future: an animal embryo-stem cell breeding system in a dish
    • Genetic parameters and characterization of egg content spreading area in White Leghorn chickens
    • In vivo prediction of the carcass fatness using live body measurements in Pekin ducks
    • Population genomic data reveal genes related to important traits of quail
    • Thyroid transcriptome analysis reveals different adaptive responses to cold environmental conditions between two chicken breeds
    • Ancestral resurrection of anthropoid estrogen receptor β demonstrates functional consequences of positive selection
    • Systematic analysis of feeding behaviors and their effects on feed efficiency in Pekin ducks
    • Combinatory Evaluation of Transcriptome and Metabolome Profiles of Low Temperature-induced Resistant Ascites Syndrome in Broiler Chickens
    • Traits of eggshells and shell membranes of translucent eggs
    • Traits of eggshells and shell membranes of translucent eggs
    • Analysis of gene expression and regulation implicates C2H9orf152 has an important role in calcium metabolism and chicken reproduction
    • SNP discovery and genotyping using Genotyping-by-Sequencing in Pekin ducks
    • Deletion of Indian hedgehog gene causes dominant semi-lethal Creeper trait in chicken
    • Impaired imprinted X chromosome inactivation is responsible for the skewed sex ratio following in vitro fertilization
    • Identification of genes for controlling swine adipose deposition by integrating transcriptome, whole-genome resequencing, and quantitative trait loci data
    • High-throughput RNA sequencing reveals structural differences of orthologous brain-expressed genes between western lowland gorillas and humans
    • De novo transcriptome assembly and identification of genes associated with feed conversion ratio and breast muscle yield in domestic ducks
    • Comparative analysis between endometrial proteomes of pregnant and non-pregnant ewes during the peri-implantation period
    • Integration of transcriptome and whole genomic resequencing data to identify key genes affecting swine fat deposition
    • A genome-wide association study identifies novel single nucleotide polymorphisms associated with dermal shank pigmentation in chickens
    • Dynamic proteomic profiles of in vivo- and in vitro-produced mouse postimplantation extraembryonic tissues and placentas
    • Integrative analysis of transcriptomic and metabolomic profiling of ascites syndrome in broiler chickens induced by low temperature
    • The liver transcriptome of two full-sibling Songliao black pigs with extreme differences in backfat thickness
    • Integrating de novo transcriptome assembly and cloning to obtain chicken Ovocleidin-17 full-length cDNA
    • Comparative analysis of proteomic profiles between endometrial caruncular and intercaruncular areas in ewes during the peri-implantation period
    • The sodium channel gene family is specifically expressed in hen uterus and associated with eggshell quality traits
    • Comparative analysis of dynamic proteomic profiles between in vivo and in vitro produced mouse embryos during postimplantation period
    • Elephant transcriptome provides insights into the evolution of eutherian placentation
    • Increasing the data size to accurately reconstruct the phylogenetic relationships between nine subgroups of the Drosophila melanogaster species group (Drosophilidae, Diptera)
    • Genomic data reject the hypothesis of a prosimian primate clade
    • Spontaneous abortion and preterm labor and delivery in nonhuman primates: evidence from a captive colony of chimpanzees (Pan troglodytes)
    • Phylogenomic analyses reveal convergent patterns of adaptive evolution in elephant and human ancestries
    • Origin and domestication history of Peking ducks deltermined through microsatellite and mitochondrial marker analysis. Science in China
    • Phylogeny of the Ferungulata (Mammalia: Laurasiatheria) as determined from phylogenomic data
    • Egg quality prediction by using Fourier transform near infrared reflectance spectroscopy (FT-NIR)
    • A primate subfamily of galectins expressed at the maternal-fetal interface that promote immune cell death
    • Adaptive history of single copy genes highly expressed in the term human placenta
    • Emergence of hormonal and redox regulation of galectin-1 in placental mammals: implication in maternal-fetal immune tolerance
    • Purifying selection and positive selection on the myxovirus resistance gene in mammals and chickens
    • Evaluation of genetic diversity in Chinese indigenous chicken breeds using microsatellite markers. Science in China
    • Factors affecting codon usage in Yersinia pestis
    • Advances in major histocompatibility complex research in poultry
    • Analysis of factors shaping S. pneumoniae codon usage
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Revisiting avian 'missing' genes from de novo assembled transcripts

January 5, 2019·
Yin Z
,
Zhu F
,
Lin F
,
Jia T
,
Wang Z
,
Sun D
,
et al
· 0 min read
Type
Journal article
Publication
BMC GENOMICS, 20(1), 4
publications
Last updated on January 5, 2019
← iTRAQ-Based Quantitative Proteomic Analysis of Duck Eggshell During Biomineralization June 1, 2019
Genome-wide association study reveals novel loci associated with body size and carcass yields in Pekin ducks January 3, 2019 →

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