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  • Publications
    • Cross-species comparison of amniote single-cell transcriptomes reveals evolutionary conservation and divergence in the chicken immune system
    • Comprehensive multi-omics reveals dynamic chromatin changes and gene regulatory networks during duck folliculogenesis
    • Single-cell transcriptomics reveal mechanisms of skeletal muscle differentiation across duck embryonic development
    • Genetic Basis of Egg Production in Baicheng-You Chickens: A Genome-Wide Association Study
    • Comprehensive duck DNA fingerprinting based on machine learning for breed identification
    • Reply to: The genomic structure of complex chromosomal rearrangement at the Fm locus in black-bone Silkie chicken
    • The Farm Animal Genotype-Tissue Expression (FarmGTEx) Project
    • Near telomere-to-telomere genome assemblies of Silkie Gallus gallus and Mallard Anas platyrhynchos restored the structure of chromosomes and missing genes in birds
    • Hyperthermia suppresses the biological characteristics and migration of chicken primordial germ cells
    • Pan-genome analyses add ∼1000 genes to the complete genome assembly of chicken
    • Research note: Whole-genome sequencing revealed genomic diversity dynamics in duck conserved populations
    • Comparative Analysis of Myofiber Characteristics, Shear Force, and Amino Acid Contents in Slow- and Fast-Growing Broilers
    • Genome-wide association analysis identifies candidate genes for carcass yields in Peking ducks
    • Transcriptional activity and variation analysis of genes critical for long-chain fatty acid (C≥16) elongation and desaturation in Pekin ducks
    • The Application of Duck Embryonic Fibroblasts CCL-141 as a Cell Model for Adipogenesis
    • The impact of NUMB on chicken abdominal adipogenesis: A comprehensive analysis
    • Genome-Wide Association Analysis Identifies Important Haplotypes and Candidate Gene XKR4 for Body Size Traits in Pekin Ducks
    • Genome-Wide Association Analysis and Genetic Parameters for Egg Production Traits in Peking Ducks
    • Green Light Mitigates Cyclic Chronic Heat-Stress-Induced Liver Oxidative Stress and Inflammation via NF-κB Pathway Inhibition in Geese
    • Transcriptional regulatory mechanism of NR2F2 and ZNF423 in avian preadipocyte differentiation
    • NOTCH1 as a Negative Regulator of Avian Adipocyte Differentiation: Implications for Fat Deposition
    • Correction to: mechanisms of hepatic steatosis in chickens: integrated analysis of the host genome, molecular phenomics and gut microbiome
    • Mechanisms of hepatic steatosis in chickens: integrated analysis of the host genome, molecular phenomics and gut microbiome
    • Selection on the promoter regions plays an important role in complex traits during duck domestication
    • A chromosome-level genome assembly for the Silkie chicken resolves complete sequences for key chicken metabolic, reproductive, and immunity genes
    • Research Note: Identification of core promoter region of the polyunsaturated fatty acid synthesis-related gene family in chicken
    • A novel candidate gene CLN8 regulates fat deposition in avian
    • Genome-wide association study identified the candidate genes associated with angel wing trait in Pekin duck
    • Exploring the effect of the microbiota on the production of duck striped eggs
    • Chromosome-level genome assembly of the Muscovy duck provides insight into fatty liver susceptibility
    • Dynamic transcriptome changes during osteogenic differentiation of bone marrow-derived mesenchymal stem cells isolated from chicken
    • Mitochondrial genome undergoes de novo DNA methylation that protects mtDNA against oxidative damage during the peri-implantation window
    • Fourth Report on Chicken Genes and Chromosomes 2022
    • The Full-Length Transcriptome Provides New Insights Into the Transcript Complexity of Abdominal Adipose and Subcutaneous Adipose in Pekin Ducks
    • Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication
    • Mining Unknown Porcine Protein Isoforms by Tissue-based Map of Proteome Enhances Pig Genome Annotation
    • Prediction of Peking duck intramuscle fat content by near-infrared spectroscopy
    • Microbial Composition in the Duodenum and Ileum of Yellow Broilers With High and Low Feed Efficiency
    • Comparison of carcass and meat quality traits between lean and fat Pekin ducks
    • Genome-wide association study reveals novel loci associated with feeding behavior in Pekin ducks
    • MYOD1 inhibits avian adipocyte differentiation via miRNA-206/KLF4 axis
    • Genome-wide association study of bone quality and feed efficiency-related traits in Pekin ducks
    • Integrating transcriptome, proteome and QTL data to discover functionally important genes for duck eggshell and albumen formation
    • Selection response and genetic parameter estimation of feeding behavior traits in Pekin ducks
    • Genome-wide association study of the level of blood components in Pekin ducks
    • The transcriptome landscapes of ovary and three oviduct segments during chicken (Gallus gallus) egg formation
    • Full-length transcriptome sequencing from multiple tissues of duck, Anas platyrhynchos
    • Transcriptome analysis of miRNA and mRNA in the livers of pigs with highly diverged backfat thickness
    • Efficacy of Fecal Sampling as a Gut Proxy in the Study of Chicken Gut Microbiota
    • Dynamics of transcriptome changes during subcutaneous preadipocyte differentiation in ducks
    • Genome-Wide Association Study of Growth and Feeding Traits in Pekin Ducks
    • Comparative study of eggshell antibacterial effectivity in precocial and altricial birds using Escherichia coli
    • iTRAQ-Based Quantitative Proteomic Analysis of Duck Eggshell During Biomineralization
    • Revisiting avian 'missing' genes from de novo assembled transcripts
    • Genome-wide association study reveals novel loci associated with body size and carcass yields in Pekin ducks
    • Revolutionize livestock breeding in the future: an animal embryo-stem cell breeding system in a dish
    • Genetic parameters and characterization of egg content spreading area in White Leghorn chickens
    • In vivo prediction of the carcass fatness using live body measurements in Pekin ducks
    • Population genomic data reveal genes related to important traits of quail
    • Thyroid transcriptome analysis reveals different adaptive responses to cold environmental conditions between two chicken breeds
    • Ancestral resurrection of anthropoid estrogen receptor β demonstrates functional consequences of positive selection
    • Systematic analysis of feeding behaviors and their effects on feed efficiency in Pekin ducks
    • Combinatory Evaluation of Transcriptome and Metabolome Profiles of Low Temperature-induced Resistant Ascites Syndrome in Broiler Chickens
    • Traits of eggshells and shell membranes of translucent eggs
    • Traits of eggshells and shell membranes of translucent eggs
    • Analysis of gene expression and regulation implicates C2H9orf152 has an important role in calcium metabolism and chicken reproduction
    • SNP discovery and genotyping using Genotyping-by-Sequencing in Pekin ducks
    • Deletion of Indian hedgehog gene causes dominant semi-lethal Creeper trait in chicken
    • Impaired imprinted X chromosome inactivation is responsible for the skewed sex ratio following in vitro fertilization
    • Identification of genes for controlling swine adipose deposition by integrating transcriptome, whole-genome resequencing, and quantitative trait loci data
    • High-throughput RNA sequencing reveals structural differences of orthologous brain-expressed genes between western lowland gorillas and humans
    • De novo transcriptome assembly and identification of genes associated with feed conversion ratio and breast muscle yield in domestic ducks
    • Comparative analysis between endometrial proteomes of pregnant and non-pregnant ewes during the peri-implantation period
    • Integration of transcriptome and whole genomic resequencing data to identify key genes affecting swine fat deposition
    • A genome-wide association study identifies novel single nucleotide polymorphisms associated with dermal shank pigmentation in chickens
    • Dynamic proteomic profiles of in vivo- and in vitro-produced mouse postimplantation extraembryonic tissues and placentas
    • Integrative analysis of transcriptomic and metabolomic profiling of ascites syndrome in broiler chickens induced by low temperature
    • The liver transcriptome of two full-sibling Songliao black pigs with extreme differences in backfat thickness
    • Integrating de novo transcriptome assembly and cloning to obtain chicken Ovocleidin-17 full-length cDNA
    • Comparative analysis of proteomic profiles between endometrial caruncular and intercaruncular areas in ewes during the peri-implantation period
    • The sodium channel gene family is specifically expressed in hen uterus and associated with eggshell quality traits
    • Comparative analysis of dynamic proteomic profiles between in vivo and in vitro produced mouse embryos during postimplantation period
    • Elephant transcriptome provides insights into the evolution of eutherian placentation
    • Increasing the data size to accurately reconstruct the phylogenetic relationships between nine subgroups of the Drosophila melanogaster species group (Drosophilidae, Diptera)
    • Genomic data reject the hypothesis of a prosimian primate clade
    • Spontaneous abortion and preterm labor and delivery in nonhuman primates: evidence from a captive colony of chimpanzees (Pan troglodytes)
    • Phylogenomic analyses reveal convergent patterns of adaptive evolution in elephant and human ancestries
    • Origin and domestication history of Peking ducks deltermined through microsatellite and mitochondrial marker analysis. Science in China
    • Phylogeny of the Ferungulata (Mammalia: Laurasiatheria) as determined from phylogenomic data
    • Egg quality prediction by using Fourier transform near infrared reflectance spectroscopy (FT-NIR)
    • A primate subfamily of galectins expressed at the maternal-fetal interface that promote immune cell death
    • Adaptive history of single copy genes highly expressed in the term human placenta
    • Emergence of hormonal and redox regulation of galectin-1 in placental mammals: implication in maternal-fetal immune tolerance
    • Purifying selection and positive selection on the myxovirus resistance gene in mammals and chickens
    • Evaluation of genetic diversity in Chinese indigenous chicken breeds using microsatellite markers. Science in China
    • Factors affecting codon usage in Yersinia pestis
    • Advances in major histocompatibility complex research in poultry
    • Analysis of factors shaping S. pneumoniae codon usage
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Single-cell Omics

January 1, 2025 · 1 min read
research

Single-cell Omics

Single-cell and spatial omics resolve the cellular composition and regulatory programs of waterfowl tissues, revealing how cell-type-specific expression shapes development, immunity, and production traits.

To be completed： details, representative results, related papers and data.

Last updated on January 1, 2025
Poultry Breeding Innovation Team
Authors
Poultry Breeding Innovation Team
← Molecular Design January 1, 2025
Quantitative Genetics January 1, 2025 →
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